High-Protein Zucchini Egg Muffins – Easy, Make-Ahead Breakfast
These zucchini egg muffins are a simple, high-protein breakfast you can make once and enjoy all week. They’re light, savory, and packed with veggies, but still satisfying enough to keep you full through a busy morning. You can customize them with cheese, herbs, and your favorite add-ins.
They reheat beautifully and travel well, making them perfect for meal prep. If you’re trying to eat more protein without fuss, this recipe makes it feel effortless.
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Get Your Program TodayWhat Makes This Recipe So Good

- High in protein: Each muffin delivers a solid protein boost thanks to eggs, cottage cheese or Greek yogurt, and optional lean meat.
- Meal-prep friendly: Bake a batch on Sunday and grab-and-go all week. They reheat in under a minute.
- Veggie-forward: Zucchini adds moisture and fiber without overpowering the flavor.
- Low-carb and gluten-free: Great for a lighter breakfast or a post-workout snack.
- Customizable: Swap cheeses, add herbs, or include extras like spinach, peppers, or turkey sausage.
What You’ll Need
- 8 large eggs
- 1 cup grated zucchini (about 1 medium; squeezed to remove excess water)
- 1/2 cup cottage cheese (or plain Greek yogurt) for extra protein and fluffiness
- 1/2 cup shredded cheese (cheddar, mozzarella, or feta)
- 1/3 cup finely chopped onion (or green onions for a milder flavor)
- 1/2 cup diced bell pepper (optional, for color and sweetness)
- 1–2 cloves garlic, minced
- 1/2 teaspoon salt (adjust to taste)
- 1/4 teaspoon black pepper
- 1/2 teaspoon smoked paprika or Italian seasoning (optional)
- 1/4 cup chopped fresh herbs (parsley, dill, or basil; optional but lovely)
- 1/2 cup cooked, lean protein (optional: diced turkey bacon, chicken sausage, or ham)
- Olive oil or cooking spray for greasing the muffin tin
Step-by-Step Instructions

- Prep the oven and pan: Preheat your oven to 350°F (175°C).
Grease a 12-cup muffin tin well or line with silicone liners to prevent sticking.
- Grate and drain the zucchini: Use the large holes of a box grater. Place the grated zucchini in a clean kitchen towel and squeeze out as much moisture as possible. This keeps the muffins from turning soggy.
- Whisk the egg base: In a large bowl, whisk the eggs until smooth.
Stir in the cottage cheese or Greek yogurt until evenly combined.
- Add mix-ins: Fold in the zucchini, shredded cheese, onion, bell pepper, garlic, salt, pepper, and seasoning. If using cooked meat or fresh herbs, add them now.
- Fill the muffin cups: Divide the mixture evenly among the 12 cups, filling each about three-quarters full. Give the pan a gentle tap on the counter to settle the batter.
- Bake: Bake for 18–22 minutes, or until the centers are set and the tops are lightly golden.
A toothpick should come out mostly clean.
- Cool slightly: Let the muffins rest in the pan for 5 minutes. Run a thin knife around the edges to release, then transfer to a cooling rack.
- Serve or store: Enjoy warm, or cool completely and store for later. They pair well with hot sauce or a spoon of salsa.
Keeping It Fresh
- Refrigerate: Store in an airtight container for up to 4 days.
Place a paper towel under the muffins to absorb moisture.
- Freeze: Wrap individually and freeze for up to 2 months. Thaw overnight in the fridge or reheat from frozen.
- Reheat: Microwave 30–45 seconds from chilled or 60–75 seconds from frozen. For a crisper edge, reheat in a 350°F (175°C) oven for 8–10 minutes.
Health Benefits
- Protein for satiety and muscle support: Eggs plus cottage cheese or Greek yogurt deliver high-quality protein to keep you full and support recovery.
- Fiber and micronutrients: Zucchini adds fiber and vitamins A and C, while peppers and onions contribute antioxidants and flavor.
- Lower-carb option: With no flour and minimal starch, these muffins fit low-carb and gluten-free eating styles.
- Healthy fats: Egg yolks offer choline and fat-soluble vitamins, which support brain and metabolic health.
Common Mistakes to Avoid
- Skipping the zucchini squeeze: Excess water makes soggy muffins.
Squeeze firmly until the zucchini feels dry.
- Overfilling the cups: Leave room for expansion or the muffins can overflow and stick.
- Under-seasoning: Eggs need salt. Taste a tiny bit of the veggie mix before adding to eggs and adjust.
- Overbaking: Dry eggs are rubbery. Pull them when the centers are just set; they’ll finish with carryover heat.
- Not greasing enough: Egg muffins like to stick.
Use plenty of spray or silicone liners.
Recipe Variations
- Mediterranean: Feta, chopped spinach, sun-dried tomatoes, and oregano.
- Southwest: Pepper jack, black beans (well-drained), corn, cilantro, and a pinch of cumin.
- Breakfast Classic: Cheddar, diced turkey bacon, and chives.
- Herb Lovers: Goat cheese, dill, basil, and a squeeze of lemon zest.
- Extra Protein Boost: Stir in 1–2 tablespoons unflavored collagen peptides or use 3/4 cup cottage cheese.
- Dairy-Free: Skip cheese and use a splash of unsweetened almond milk. Add nutritional yeast for a savory note.
FAQ
How many muffins is a serving?
Two muffins make a satisfying serving for most people, especially with fruit or a slice of whole-grain toast on the side.
Can I make these without cottage cheese or Greek yogurt?
Yes. Replace with 1/4 cup milk or a dairy-free alternative.
The muffins will be slightly less creamy and a bit lower in protein.
Do I need to cook the vegetables first?
Not for zucchini, onion, and bell pepper if they’re finely chopped. If using mushrooms or spinach, sauté briefly to remove moisture.
How can I tell when they’re done?
The tops should be set and lightly golden, and a toothpick should come out mostly clean. If the centers jiggle, give them another 2–3 minutes.
What’s the best way to prevent sticking?
Use silicone liners or a well-greased nonstick muffin tin.
Run a thin spatula or knife around the edges before lifting them out.
Can I make them in a mini muffin tin?
Absolutely. Reduce the baking time to 10–12 minutes and check for doneness early. Great for snack-sized portions.
Are these kid-friendly?
Yes.
Keep the seasoning mild, use a familiar cheese, and chop veggies very small. Kids usually enjoy the soft, savory texture.
How much protein is in each muffin?
It varies by add-ins, but with cottage cheese and a little shredded cheese, expect around 7–9 grams of protein per muffin.
Can I bake this as a frittata instead?
Yes. Pour the mixture into a greased 9-inch baking dish and bake at 350°F (175°C) for 25–30 minutes, until set.
What can I serve with these?
They’re great with avocado slices, salsa, a crisp side salad, or fresh berries for a balanced plate.
In Conclusion
High-Protein Zucchini Egg Muffins make breakfast simple, nutritious, and genuinely tasty.
They’re easy to prep, easy to customize, and easy to reheat on busy mornings. With plenty of protein and vegetables in every bite, they’re a smart staple for any weekly routine. Make a batch, stash them in the fridge, and enjoy a fast, satisfying start to your day.